Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs998443 chr9:138675055 C/T 1.97E-5 473 31.63 28.7 18.1 KM Plot
SARC rs10016837 chr4:42116794 C/G 9.8E-5 258 33.2 32.4 13.88 KM Plot
SARC rs1005835 chr22:30834250 A/G 4.15E-5 251 35.62 23.03 14.23 KM Plot
SARC rs10115576 chr9:115617822 T/C 1.41E-6 255 10.6 30.47 32.13 KM Plot
SARC rs1012540 chr15:81246092 A/T 1.76E-5 254 32.3 27.3 7.82 KM Plot
SARC rs1012541 chr15:81246028 G/A 1.92E-5 253 32.3 30.25 7.82 KM Plot
SARC rs1020028 chr15:40243328 T/C 4.94E-5 254 31.27 35.37 13.4 KM Plot
SARC rs10203732 chr2:70191360 C/T 5.44E-8 255 33.48 31.93 10.83 KM Plot
SARC rs1041086 chr9:115627744 C/G 1.24E-6 257 10.6 33.47 31.77 KM Plot
SARC rs10427515 chr21:30386323 C/A 3.42E-5 256 32.18 33.77 10.87 KM Plot
SARC rs10504471 chr8:71189128 T/C 1.47E-8 256 33.9 20.17 3.97 KM Plot
SARC rs10507292 chr13:21356855 C/G 0 258 1.07 28.33 32.13 KM Plot
SARC rs10510761 chr3:52965255 A/G 0 258 2.13 34.57 31.1 KM Plot
SARC rs10516181 chr4:7004506 G/A 2.46E-5 255 16.17 34 32.6 KM Plot
SARC rs10516788 chr4:87960857 A/G 1.28E-5 255 30.73 36.8 19.8 KM Plot